Basic Information
Locus ID:
gene.Cymno04g07810
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 17740644 | 17751432 | - | gene.Cymno04g07810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 83,572.58 Da | 40.84 | 93.61 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 360 | 660 | 1.41726E-149 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 45 | 342 | 6.97923E-165 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 80 | 315 | 6.5E-6 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 364 | 655 | 7.7E-38 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 45 | 342 | 2.3E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 357 | 660 | 5.23E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 358 | 660 | 2.7E-47 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 43 | 343 | 4.7E-32 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 359 | 661 | 27.394846 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 45 | 343 | 31.422415 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_010928867.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Elaeis guineensis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PJI7 | glycerophosphodiester phosphodiesterase OS=Zostera marina OX=29655 GN=ZOSMA_221G00170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology