Basic Information
Locus ID:
gene.Cymno04g07490
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Filamin/ABP280 repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 17546695 | 17559221 | + | gene.Cymno04g07490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 123,186.52 Da | 45.55 | 89.35 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00630 | Filamin/ABP280 repeat | 518 | 592 | 7.7E-9 | IPR017868 |
| Pfam | PF17963 | Bacterial Ig domain | 594 | 672 | 1.1E-9 | - |
| Pfam | PF00630 | Filamin/ABP280 repeat | 364 | 483 | 5.3E-10 | IPR017868 |
| SUPERFAMILY | SSF81296 | E set domains | 485 | 597 | 5.27E-8 | IPR014756 |
| SUPERFAMILY | SSF81296 | E set domains | 142 | 256 | 1.8E-6 | IPR014756 |
| SUPERFAMILY | SSF81296 | E set domains | 365 | 484 | 1.28E-5 | IPR014756 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 498 | 596 | 5.4E-9 | IPR013783 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 142 | 257 | 6.9E-9 | IPR013783 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 364 | 496 | 5.5E-10 | IPR013783 |
| Gene3D | G3DSA:2.60.40.2810 | - | 601 | 689 | 1.2E-11 | - |
| ProSiteProfiles | PS50194 | Filamin/ABP280 repeat profile. | 496 | 595 | 11.458374 | IPR017868 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1044 | 1111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1037 | 1111 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49150.3 | - | 0 |
| RefSeq | XP_026661746.2 | protein GAMETE EXPRESSED 2 isoform X1 [Phoenix dactylifera] | 0 |
| F4K4R6 | Protein GAMETE EXPRESSED 2 OS=Arabidopsis thaliana OX=3702 GN=GEX2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PZ49 | Protein GAMETE EXPRESSED 2 OS=Zostera marina OX=29655 GN=ZOSMA_132G00540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28056, jg28058 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19054 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012422 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59613, Sbi_jg63036 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23858 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025794 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl03321, Sgl03623, Sgl08394, Sgl08743 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000015254, gene:ENSEOMG00000029727 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0016650, CQ.Regalona.r1.3BG0017410 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234120 |
| Apiaceae | Apium graveolens | 1 | Ag5G02409 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710484 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2580.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G16829 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G49150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005444m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g19500.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g070140.2N, BniB04g005630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1115 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1211 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g07490 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12155 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1280 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022641 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38029, Lb0G38030, Lb0G38031 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1978, BH03.2425, CH03.2309 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0535730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0482440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011719, gene-QYE76_017069 |
| Poaceae | Oryza coarctata | 2 | Oco17G005300, Oco18G005320 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g25650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G187800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705316 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G009610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G362000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG035460, gene_TRIDC5AG035470 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G221000.2, TraesCS5B02G219800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb099800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20085 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32383 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.632, evm.TU.LG12.460, evm.TU.LG12.999 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g19310, gene.Posoc01g32080, gene.Posoc07g05890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1454 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-20033, nbisL1-mrna-20034, nbisL1-mrna-20259 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13567 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13395, nbisL1-mrna-13396, nbisL1-mrna-19089 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.214 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011901, Maker00012099 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9086 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12134 |
| Salicaceae | Populus euphratica | 1 | populus_peu22635 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626771 |
| Solanaceae | Solanum chilense | 1 | SOLCI000635200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015974 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8526 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1661 |
| Zosteraceae | Zostera marina | 1 | Zosma01g40020.v3.1 |