Basic Information
Locus ID:
gene.Cymno04g07370
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 17478906 | 17484803 | - | gene.Cymno04g07370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 102,996.04 Da | 60.37 | 59.01 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 420 | 451 | 5.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 705 | 741 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 528 | 563 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 570 | 606 | 0.0023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 414 | 744 | 1.05E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 497 | 784 | 7.4E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 359 | 487 | 3.3E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 413 | 452 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 526 | 564 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 608 | 647 | 7.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 567 | 606 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 699 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 700 | 741 | 0.0039 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 420 | 453 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 718 | 750 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 420 | 461 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 533 | 567 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 573 | 607 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 533 | 573 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 573 | 607 | 12.714052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 439 | 453 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 593 | 607 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 439 | 453 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 551 | 565 | 2.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 865 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 778 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 865 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 511 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039126361.1 | WD repeat-containing protein 44-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7I8L0S3 | Uncharacterized protein OS=Spirodela intermedia OX=51605 GN=SI8410_10014259 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology