Basic Information
Locus ID:
gene.Cymno04g07060
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 17285381 | 17287595 | - | gene.Cymno04g07060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 43,115.33 Da | 34.43 | 91.97 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 331 | 387 | 3.7E-13 | IPR008811 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 9 | 249 | 9.3E-64 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 178 | 384 | 2.45E-16 | IPR017853 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 162 | 252 | 4.4E-6 | IPR013785 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55740.1 | seed imbibition 1. | 0 |
| RefSeq | XP_010928030.1 | probable galactinol--sucrose galactosyltransferase 1 isoform X2 [Elaeis guineensis] | 0 |
| Q84VX0 | Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5A2F2 | galactinol--sucrose galactosyltransferase OS=Nyssa sinensis OX=561372 GN=F0562_009930 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology