Basic Information
Locus ID:
gene.Cymno04g05460
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 15572058 | 15576630 | + | gene.Cymno04g05460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 31,684.70 Da | 47.99 | 57.37 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 34 | 108 | 3.9E-21 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 162 | 205 | 4.5E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 210 | 268 | 4.6E-26 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 161 | 210 | 2.58E-10 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 99 | 156 | 4.05E-20 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 32 | 97 | 2.09E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 226 | 3.6E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 234 | 272 | 1.6E-17 | - |
| SMART | SM00184 | ring_2 | 163 | 205 | 2.6E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 98 | 162 | 33.754745 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 163 | 205 | 11.604098 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 27 | 96 | 25.097181 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_020580636.1 | E3 ubiquitin-protein ligase MIEL1 isoform X1 [Phalaenopsis equestris] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1Y8T3 | RING finger and CHY zinc finger domain-containing protein 1 OS=Anthurium amnicola OX=1678845 GN=Rchy1_9 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology