Basic Information
Locus ID:
gene.Cymno04g05410
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 15537914 | 15541640 | + | gene.Cymno04g05410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 65,666.27 Da | 34.71 | 95.21 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 78 | 124 | 4.1E-22 | IPR041101 |
| Pfam | PF18511 | F-box | 21 | 58 | 1.1E-16 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 52 | 2.45E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 45 | 547 | 7.65E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 58 | 589 | 1.4E-167 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 57 | 3.5E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 141 | 166 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 325 | 348 | 490.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 383 | 407 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 492 | 516 | 37.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 443 | 466 | 140.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010941793.1 | transport inhibitor response 1-like protein Os05g0150500 [Elaeis guineensis] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9NLC3 | Auxin signaling F-box 2 OS=Zostera marina OX=29655 GN=ZOSMA_8G00250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology