Basic Information
Locus ID:
gene.Cymno04g05230
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 15320032 | 15321213 | + | gene.Cymno04g05230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 42,646.86 Da | 41.18 | 99.97 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 145 | 161 | 0.053 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 213 | 249 | 1.3E-6 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 67 | 9.3E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 366 | 1.46E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 259 | 367 | 5.1E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 191 | 258 | 1.9E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 190 | 2.0E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 141 | 2.4E-21 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 234 | 258 | 7.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 146 | 169 | 5.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 302 | 325 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 122 | 145 | 390.0 | IPR003591 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 234 | 247 | 1.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 149 | 162 | 1.5E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_021612328.1 | LRR receptor-like serine/threonine-protein kinase ER1 [Manihot esculenta] | 0 |
| TrEMBL | A0A6A1URY3 | LRR receptor-like serine/threonine-protein kinase ERL2 OS=Morella rubra OX=262757 GN=CJ030_MR8G017933 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology