Basic Information
Locus ID:
gene.Cymno04g04220
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 14306823 | 14313528 | - | gene.Cymno04g04220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 45,461.52 Da | 37.21 | 90.74 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 59 | 322 | 2.2E-117 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 324 | 379 | 3.01E-7 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 56 | 322 | 3.74E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 87 | 384 | 3.1E-109 | IPR027417 |
| SMART | SM00382 | AAA_5 | 110 | 283 | 2.1E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 57 | 377 | 7.9E-135 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 251 | 327 | 26.311651 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 88 | 247 | 36.045811 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 268 | 276 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 180 | 209 | 1.5E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 146 | 175 | 1.5E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 265 | 293 | 1.5E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 298 | 327 | 1.5E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 218 | 247 | 1.5E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 351 | 368 | 1.5E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 57 | 383 | 42.654686 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 57 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_020104766.1 | DNA repair protein recA homolog 3, mitochondrial isoform X1 [Ananas comosus] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6P5G835 | DNA repair protein recA homolog 3, mitochondrial isoform X1 OS=Ananas comosus OX=4615 GN=LOC109721524 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology