Basic Information
Locus ID:
gene.Cymno04g01460
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
PAS fold
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 1040092 | 1073864 | + | gene.Cymno04g01460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 85,413.04 Da | 53.90 | 73.39 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 122 | 223 | 9.14075E-13 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 489 | 735 | 2.57463E-129 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 483 | 734 | 1.5E-66 | IPR001245 |
| Pfam | PF00989 | PAS fold | 114 | 220 | 4.4E-10 | IPR013767 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 117 | 223 | 1.06E-17 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 465 | 733 | 3.37E-83 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 476 | 560 | 4.3E-29 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 122 | 228 | 1.4E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 561 | 765 | 4.0E-62 | - |
| SMART | SM00091 | pas_2 | 113 | 179 | 6.3E-6 | IPR000014 |
| SMART | SM00220 | serkin_6 | 483 | 735 | 8.2E-56 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 115 | 223 | 4.9E-11 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 483 | 745 | 42.44936 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 111 | 182 | 14.320395 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 602 | 614 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 596 | 614 | 3.1E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 643 | 653 | 3.1E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 557 | 570 | 3.1E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 706 | 728 | 3.1E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 662 | 684 | 3.1E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 48 | - | - |
| Coils | Coil | Coil | 6 | 33 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_009402503.1 | PREDICTED: serine/threonine-protein kinase STY46 [Musa acuminata subsp. malaccensis] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IR88 | RGS domain-containing serine/threonine-protein kinase A OS=Cocos nucifera OX=13894 GN=COCNU_12G003090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology