halophFGD

Basic Information

Locus ID: gene.Cymno04g01240

Species & Taxonomic ID: Cymodocea nodosa & 55448

Genome Assembly: GCA_036874045.1

Description: Pyruvate kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr04	815081	824602	+	gene.Cymno04g01240

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.21	57,699.95 Da	27.82	99.89	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02887	Pyruvate kinase, alpha/beta domain	395	522	1.9E-23	IPR015795
Pfam	PF00224	Pyruvate kinase, barrel domain	30	375	9.6E-93	IPR015793
SUPERFAMILY	SSF52935	PK C-terminal domain-like	358	520	2.62E-22	IPR036918
SUPERFAMILY	SSF51621	Phosphoenolpyruvate/pyruvate domain	6	375	2.69E-74	IPR015813
SUPERFAMILY	SSF50800	PK beta-barrel domain-like	96	186	1.74E-8	IPR011037
Gene3D	G3DSA:2.40.33.10	-	96	202	1.3E-147	IPR015806
Gene3D	G3DSA:3.40.1380.20	-	371	513	1.3E-147	IPR036918
Gene3D	G3DSA:3.20.20.60	-	30	370	1.3E-147	IPR040442
TIGRFAM	TIGR01064	pyruv_kin: pyruvate kinase	30	516	6.7E-109	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	348	364	6.2E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	253	279	6.2E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	329	347	6.2E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	85	101	6.2E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	221	235	6.2E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	280	304	6.2E-44	IPR001697

Gene Ontology

Biological Process:

GO:0006096 (glycolytic process)

Molecular Function:

GO:0000287 (magnesium ion binding) GO:0003824 (catalytic activity) GO:0004743 (pyruvate kinase activity) GO:0030955 (potassium ion binding)

KEGG Pathway

KO Term:

K00873 (pyruvate kinase [EC:2.7.1.40])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00620 (Pyruvate metabolism) map00620 (Pyruvate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00002 (Glycolysis, core module involving three-carbon compounds) M00049 (Adenine ribonucleotide biosynthesis, IMP => ADP,ATP) M00050 (Guanine ribonucleotide biosynthesis, IMP => GDP,GTP)

Reaction:

R00200 (ATP + Pyruvate <=> ADP + Phosphoenolpyruvate) R00430 (GTP + Pyruvate <=> GDP + Phosphoenolpyruvate) R01138 (dATP + Pyruvate <=> dADP + Phosphoenolpyruvate) R01858 (dGTP + Pyruvate <=> dGDP + Phosphoenolpyruvate) R02320 (Nucleoside triphosphate + Pyruvate <=> NDP + Phosphoenolpyruvate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G52990.1	Pyruvate kinase family protein.
RefSeq	XP_039125343.1	LOW QUALITY PROTEIN: pyruvate kinase 1, cytosolic-like [Dioscorea cayenensis subsp. rotundata]
Swiss-Prot	B8BJ39	Pyruvate kinase 1, cytosolic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35105 PE=3 SV=1
TrEMBL	A0A0A7LU76	Pyruvate kinase OS=Albuca bracteata OX=82047 GN=PK-3 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14503, jg14504, jg15028, jg31985, jg32659, jg3550
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14392, gene_4596
Amaranthaceae	Atriplex hortensis	3	Ah007026, Ah022120, Ah030809
Amaranthaceae	Beta vulgaris	2	BVRB_3g062650, BVRB_7g160680
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg27491, Sbi_jg33228, Sbi_jg35918, Sbi_jg59711 ... Sbi_jg63766
Amaranthaceae	Salicornia europaea	2	Seu_jg24163, Seu_jg7943
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005650, GOSA_00013019, GOSA_00024114
Amaranthaceae	Suaeda glauca	5	Sgl02246, Sgl21440, Sgl68668, Sgl71366, Sgl74959
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000000151, gene:ENSEOMG00000029320 ... gene:ENSEOMG00000036612, gene:ENSEOMG00000039646, gene:ENSEOMG00000043750, gene:ENSEOMG00000043781
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0022640, CQ.Regalona.r1.3BG0023370 ... CQ.Regalona.r1.4AG0015520, CQ.Regalona.r1.7AG0019400, CQ.Regalona.r1.7BG0022000
Anacardiaceae	Pistacia vera	3	pistato.v30170160, pistato.v30274520, pistato.v30295450
Apiaceae	Apium graveolens	3	Ag11G04553, Ag2G02950, Ag3G02621
Arecaceae	Cocos nucifera	3	COCNU_03G001910, scaffold004526G000010 ... scaffold007042G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103696956, gene-LOC103697737, gene-LOC103704838
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.882.V1.1, AsparagusV1_09.271.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G31230, Ftri12G08362, Ftri18G02215, Ftri6G04778 ... Ftri9G22291
Brassicaceae	Arabidopsis thaliana	2	AT2G36580.1, AT3G52990.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10010288m.g.v1.0, Thhalv10016506m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g18870.v2.2, Sp5g09330.v2.2
Brassicaceae	Brassica nigra	3	BniB06g058090.2N, BniB06g066250.2N, BniB08g067380.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1515, Ceq05G1171
Casuarinaceae	Casuarina glauca	3	Cgl02G1570, Cgl05G1182, Cgl05G1184
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g01240, gene.Cymno07g10330, gene.Cymno08g03420
Dunaliellaceae	Dunaliella salina	3	Dusal.0164s00012.v1.0, Dusal.0444s00010.v1.0 ... Dusal.1013s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate06g11500, gene.Thate06g11840, gene.Thate08g08560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8580
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2155, evm.TU.LG02.1190
Plantaginaceae	Plantago ovata	3	Pov_00004952, Pov_00006274, Pov_00040226
Plumbaginaceae	Limonium bicolor	4	Lb2G09778, Lb3G16095, Lb3G19161, Lb3G19295
Poaceae	Echinochloa crus-galli	8	AH04.273, AH04.990, AH05.182, BH04.260, BH04.939, BH05.210 ... CH04.1084, CH05.267
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_5AG0381270, gene-QOZ80_5BG0428320 ... gene-QOZ80_9AG0674470, gene-QOZ80_9AG0678490, gene-QOZ80_9BG0698280, gene-QOZ80_9BG0702120
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0345500.1, HORVU.MOREX.r3.5HG0459370.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003144, gene-QYE76_064297, gene-QYE76_064309
Poaceae	Oryza coarctata	6	Oco21G001040, Oco21G003200, Oco22G001870, Oco22G004000 ... Oco23G001670, Oco24G001210
Poaceae	Oryza sativa	3	LOC_Os11g05110.1, LOC_Os11g10980.1, LOC_Os12g05110.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G046700, gene-BS78_08G022200 ... gene-BS78_10G045000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0103974, Pt_Chr0703114, Pt_Chr0703153, Pt_Chr0704216
Poaceae	Sporobolus alterniflorus	8	Chr04G022040, Chr06G023760, Chr07G021430, Chr17G010520 ... Chr19G012030, Chr27G003930, Chr31G000890, Chr31G003340
Poaceae	Thinopyrum elongatum	2	Tel3E01G781500, Tel5E01G237000
Poaceae	Triticum dicoccoides	5	gene_TRIDC1BG017820, gene_TRIDC4AG032330 ... gene_TRIDC4BG016570, gene_TRIDC5AG022750, gene_TRIDC5BG023180
Poaceae	Triticum aestivum	6	TraesCS4A02G203300.1, TraesCS4B02G107200.4 ... TraesCS4D02G104100.1, TraesCS5A02G131100.1, TraesCS5B02G131000.1, TraesCS5D02G138800.1
Poaceae	Zea mays	3	Zm00001eb168480_P001, Zm00001eb196650_P001 ... Zm00001eb406450_P001
Poaceae	Zoysia japonica	3	nbis-gene-25666, nbis-gene-40164, nbis-gene-46368
Poaceae	Zoysia macrostachya	4	Zma_g17558, Zma_g17777, Zma_g24725, Zma_g25493
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.2283, evm.TU.LG07.405, evm.TU.LG08.1498 ... evm.TU.LG15.535, evm.TU.LG16.1163, evm.TU.LG17.1331, evm.TU.LG20.1379, evm.TU.LG22.390
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g15490, gene.Posoc05g23180
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1142, evm.TU.Scaffold_2_RagTag.954 ... evm.TU.Scaffold_1_RagTag.1472
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13437, nbisL1-mrna-4253, nbisL1-mrna-6124
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1040, nbisL1-mrna-4535
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-21782, nbisL1-mrna-3984, nbisL1-mrna-3987
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.323, evm.TU.utg000009l.927 ... evm.TU.utg000016l.488
Rhizophoraceae	Kandelia obovata	3	Maker00003873, Maker00006164, Maker00016410
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12584, nbisL1-mrna-16312, nbisL1-mrna-7662
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21418, nbisL1-mrna-415, nbisL1-mrna-5785
Salicaceae	Populus euphratica	3	populus_peu06154, populus_peu11596, populus_peu20012
Solanaceae	Lycium barbarum	2	gene-LOC132607154, gene-LOC132629927
Solanaceae	Solanum chilense	2	SOLCI000086100, SOLCI003915600
Solanaceae	Solanum pennellii	3	gene-LOC107002489, gene-LOC107004573, gene-LOC107029266
Tamaricaceae	Reaumuria soongarica	4	STRG.1047_chr01_+, STRG.21195_chr08_-, STRG.27523_chr04_- ... STRG.32234_chr09_-
Tamaricaceae	Tamarix chinensis	4	TC00000028, TC02G1398, TC02G2553, TC12G1933
Zosteraceae	Zostera marina	4	Zosma02g00810.v3.1, Zosma02g04450.v3.1, Zosma04g16420.v3.1 ... Zosma05g03520.v3.1