Basic Information
Locus ID:
gene.Cymno03g13440
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 27116100 | 27121240 | + | gene.Cymno03g13440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 53,290.64 Da | 44.78 | 77.19 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 119 | 363 | 1.47E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 112 | 398 | 3.2E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 107 | 144 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 362 | 0.81 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 318 | 0.062 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_010278936.1 | PREDICTED: autophagy-related protein 18c-like isoform X1 [Nelumbo nucifera] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8BC73 | autophagy-related protein 18c-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104612963 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology