Basic Information
Locus ID:
gene.Cymno03g13270
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 26978743 | 26983164 | + | gene.Cymno03g13270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 66,132.91 Da | 44.24 | 98.36 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 82 | 128 | 3.1E-21 | IPR041101 |
| Pfam | PF18511 | F-box | 24 | 63 | 3.5E-14 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 86 | 550 | 8.89E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 62 | 593 | 9.2E-164 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 61 | 6.8E-13 | - |
| SMART | SM00367 | LRR_CC_2 | 171 | 205 | 75.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 120 | 144 | 90.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 447 | 470 | 55.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 496 | 520 | 21.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 387 | 411 | 5.6 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010941793.1 | transport inhibitor response 1-like protein Os05g0150500 [Elaeis guineensis] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PHC9 | Auxin signaling F-box 2 OS=Zostera marina OX=29655 GN=ZOSMA_23G00160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology