Basic Information
Locus ID:
gene.Cymno03g12540
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
RHC1A
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 26543843 | 26545060 | + | gene.Cymno03g12540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 35,774.79 Da | 75.45 | 62.50 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 205 | 247 | 9.4106E-26 | - |
| Pfam | PF14369 | zinc-ribbon | 44 | 77 | 1.9E-8 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 205 | 247 | 1.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 187 | 252 | 3.09E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 253 | 6.6E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 206 | 246 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 206 | 247 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 274 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009409315.1 | PREDICTED: probable E3 ubiquitin-protein ligase RHC1A isoform X2 [Musa acuminata subsp. malaccensis] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q6D7 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_102G00250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology