Basic Information
Locus ID:
gene.Cymno03g12290
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
AFB5
Description:
Transport inhibitor response 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 26385151 | 26385378 | + | gene.Cymno03g12290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 8,320.08 Da | 54.37 | 71.47 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 47 | 75 | 1.8E-11 | IPR041567 |
| Gene3D | G3DSA:1.20.1280.50 | - | 46 | 75 | 2.5E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24390.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_044511193.1 | transport inhibitor response 1-like protein [Mangifera indica] | 0 |
| Q8RWQ8 | F-box protein FBX14 OS=Arabidopsis thaliana OX=3702 GN=FBX14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834TXG9 | Transport inhibitor response 1-like protein OS=Senna tora OX=362788 GN=G2W53_012315 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g12290 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028675 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21756 |