Basic Information
Locus ID:
gene.Cymno03g11120
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 25517383 | 25521392 | + | gene.Cymno03g11120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 46,110.13 Da | 52.72 | 69.50 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 58 | 128 | 2.23157E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 262 | 336 | 4.7191E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 142 | 216 | 2.4367E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 143 | 213 | 1.2E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 58 | 124 | 8.7E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 329 | 5.1E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 255 | 346 | 1.06E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 41 | 134 | 4.3E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 135 | 223 | 4.43E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 140 | 220 | 2.9E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 343 | 3.5E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 139 | 2.7E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 142 | 215 | 1.1E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 57 | 126 | 3.0E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 263 | 332 | 1.1E-18 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 142 | 215 | 0.0019 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 263 | 332 | 5.7 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 141 | 219 | 17.148237 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 56 | 130 | 15.016313 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 336 | 16.329578 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_042486815.1 | oligouridylate-binding protein 1-like [Macadamia integrifolia] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8AH62 | oligouridylate-binding protein 1-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104600504 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology