Basic Information
Locus ID:
gene.Cymno03g06570
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 6973816 | 6987142 | + | gene.Cymno03g06570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.30 | 169,577.73 Da | 38.40 | 108.41 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 627 | 827 | 7.69068E-107 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1263 | 1483 | 1.80113E-126 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 946 | 1240 | 7.15471E-98 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 314 | 601 | 1.98548E-107 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 645 | 779 | 1.0E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 315 | 581 | 4.8E-28 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 948 | 1191 | 3.2E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1282 | 1430 | 6.4E-31 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 623 | 849 | 7.85E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 945 | 1245 | 6.67E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1256 | 1495 | 1.38E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 303 | 601 | 3.14E-38 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1248 | 1501 | 4.9E-83 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 907 | 1246 | 3.1E-63 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 618 | 867 | 6.9E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 288 | 609 | 3.1E-52 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1291 | 1476 | 6.6E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 654 | 827 | 3.9E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 627 | 850 | 22.70919 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1265 | 1499 | 17.57383 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 317 | 593 | 37.141949 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 948 | 1218 | 35.780548 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 752 | 766 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 918 | - | - |
| Coils | Coil | Coil | 904 | 924 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_010936069.1 | ABC transporter C family member 5 isoform X1 [Elaeis guineensis] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PDT4 | Multidrug resistance protein ABC transporter family OS=Zostera marina OX=29655 GN=ZOSMA_279G00070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology