Basic Information
Locus ID:
gene.Cymno03g06060
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 5995569 | 5996348 | + | gene.Cymno03g06060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 27,612.04 Da | 62.42 | 71.12 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 125 | 168 | 8.4027E-16 | - |
| Pfam | PF13639 | Ring finger domain | 125 | 168 | 1.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 173 | 2.5E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 172 | 1.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 167 | 8.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 168 | 11.840146 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 198 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_024987077.1 | RING-H2 finger protein ATL57-like [Cynara cardunculus var. scolymus] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9P5E3 | E3 ubiquitin-protein ligase, ATL family OS=Zostera marina OX=29655 GN=ZOSMA_37G00950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12946, jg16510, jg35948, jg8202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011684 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11972, Sbi_jg46905 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21195 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009535 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80387, Sgl82848 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000020022 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0012490 |
| Apiaceae | Apium graveolens | 1 | AgUnG00066 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G007970 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC108511234 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G20202 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G27940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017824m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g10760.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1688 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl05G1683, Cgl05G1686, Cgl05G1687 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g06060 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g01750, gene.Thate08g01760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-480 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015906, Pov_00026478 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1041, evm.TU.LG08.1594, evm.TU.LG11.480 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g13740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.834 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16589 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5506 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17158 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000025l.20 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012333 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23172 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23798 |
| Salicaceae | Populus euphratica | 2 | populus_peu02506, populus_peu37716 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600491 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003390 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1906 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23090.v3.1 |