Basic Information
Locus ID:
gene.Cymno03g06020
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 5850998 | 5866778 | + | gene.Cymno03g06020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 89,863.20 Da | 49.78 | 86.89 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 52 | 203 | 1.02013E-41 | - |
| Pfam | PF00069 | Protein kinase domain | 532 | 778 | 5.8E-43 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 503 | 782 | 7.55E-70 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 600 | 798 | 8.9E-48 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 39 | 177 | 1.4E-6 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 511 | 599 | 5.8E-28 | - |
| SMART | SM00220 | serkin_6 | 527 | 792 | 5.7E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 527 | 800 | 34.95834 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 645 | 657 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 533 | 555 | - | IPR017441 |
| Coils | Coil | Coil | 441 | 489 | - | - |
| Coils | Coil | Coil | 357 | 384 | - | - |
| Coils | Coil | Coil | 399 | 433 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_008778858.2 | U-box domain-containing protein 33-like isoform X1 [Phoenix dactylifera] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A843UTR0 | RING-type E3 ubiquitin transferase (Fragment) OS=Colocasia esculenta OX=4460 GN=Taro_016695 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology