Basic Information
Locus ID:
gene.Cymno03g05260
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 4722258 | 4732952 | - | gene.Cymno03g05260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 70,008.06 Da | 34.59 | 93.71 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 263 | 305 | 1.11392E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 386 | 425 | 2.3E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 259 | 329 | 2.3E-24 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 472 | 507 | 8.7E-6 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 334 | 4.32E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 356 | 630 | 7.68E-49 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 470 | 633 | 5.8E-28 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 31 | 138 | 6.1E-7 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 333 | 1.6E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 346 | 469 | 1.3E-25 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 262 | 325 | 6.7E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 550 | 590 | 290.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 509 | 549 | 1.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 468 | 508 | 4.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 427 | 467 | 0.021 | IPR000225 |
| SMART | SM00185 | arm_5 | 386 | 426 | 1.5E-5 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 520 | 558 | 8.9074 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 258 | 332 | 44.67255 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 397 | 439 | 11.3574 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_010935712.1 | U-box domain-containing protein 12 isoform X1 [Elaeis guineensis] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YKX4 | RING-type E3 ubiquitin transferase (Fragment) OS=Anthurium amnicola OX=1678845 GN=PUB12_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology