Basic Information
Locus ID:
gene.Cymno03g04500
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
beta-N-acetylhexosaminidase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 3808595 | 3809871 | + | gene.Cymno03g04500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 35,187.91 Da | 34.82 | 59.24 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 26 | 61 | 9.2218E-16 | - |
| CDD | cd00325 | chitinase_GH19 | 80 | 310 | 4.19825E-120 | - |
| Pfam | PF00182 | Chitinase class I | 79 | 310 | 2.4E-136 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 27 | 65 | 1.5E-12 | IPR001002 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 76 | 316 | 2.11E-110 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 27 | 70 | 1.14E-12 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 162 | 219 | 4.7E-124 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 84 | 316 | 4.7E-124 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 25 | 67 | 7.8E-15 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 27 | 65 | 1.2E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 317 | 1.0E-129 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 25 | 67 | 10.940529 | IPR001002 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | 5.0 | - |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 223 | 233 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 97 | 119 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 37 | 56 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 43 | 50 | 4.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 50 | 57 | 4.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 35 | 43 | 4.9E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_043709827.1 | basic endochitinase-like isoform X2 [Telopea speciosissima] | 0 |
| Q42993 | Chitinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6V7NRJ2 | chitinase OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS4450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology