Basic Information
Locus ID:
gene.Cymno03g03690
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 3086941 | 3104920 | + | gene.Cymno03g03690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 125,365.21 Da | 39.60 | 82.40 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 454 | 488 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 919 | 951 | 0.039 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 350 | 664 | 4.12E-42 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 838 | 1096 | 1.08E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 770 | 1102 | 1.3E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 510 | 682 | 4.4E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 310 | 509 | 1.3E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 447 | 488 | 2.5E-5 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.7E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.5E-11 | IPR006595 |
| SMART | SM00320 | WD40_4 | 535 | 578 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1004 | 1045 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 913 | 952 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 910 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 621 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 441 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 532 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 624 | 665 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 825 | 867 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 380 | 0.66 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.433357 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 920 | 951 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 454 | 497 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 35 | 92 | 12.496336 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 920 | 951 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 347 | 389 | 8.703868 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1134 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_006855163.1 | topless-related protein 1 [Amborella trichopoda] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | U5D326 | TOPLESS OS=Amborella trichopoda OX=13333 GN=AMTR_s00051p00079490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology