Basic Information
Locus ID:
gene.Cymno03g03550
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 2881770 | 2893628 | - | gene.Cymno03g03550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 63,998.01 Da | 28.40 | 98.28 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 445 | 545 | 1.61363E-27 | - |
| CDD | cd00030 | C2 | 265 | 367 | 1.40294E-25 | - |
| Pfam | PF00168 | C2 domain | 263 | 367 | 3.1E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 69 | 250 | 1.4E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 443 | 545 | 3.7E-26 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 442 | 561 | 3.27E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 256 | 390 | 2.42E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 423 | 561 | 1.8E-35 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 256 | 391 | 1.2E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 364 | 1.6E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 444 | 542 | 1.5E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 244 | 365 | 20.726261 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 250 | 25.701666 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 425 | 543 | 21.422228 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 460 | 472 | 2.5E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 508 | 516 | 2.5E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 486 | 499 | 2.5E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_008788811.2 | synaptotagmin-5-like isoform X1 [Phoenix dactylifera] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9Q422 | Synaptotagmin-5 OS=Zostera marina OX=29655 GN=ZOSMA_107G00350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology