Basic Information
Locus ID:
gene.Cymno03g03540
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 2857032 | 2879596 | - | gene.Cymno03g03540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 84,975.16 Da | 48.94 | 75.03 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09430 | Protein of unknown function (DUF2012) | 608 | 711 | 8.5E-21 | IPR019008 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 201 | 528 | 5.2E-46 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 58 | 128 | 4.6E-9 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 130 | 7.06E-11 | - |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 583 | 662 | 5.1E-8 | IPR013784 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 199 | 530 | 1.04E-65 | IPR038765 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 146 | 9.5E-16 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 195 | 428 | 7.6E-49 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 429 | 545 | 1.6E-19 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 201 | 541 | 38.501064 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 56 | 126 | 10.378136 | IPR001607 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 487 | 504 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 202 | 217 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 758 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10790.1 | ubiquitin-specific protease 22. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010913339.1 | ubiquitin C-terminal hydrolase 22 isoform X2 [Elaeis guineensis] | 0 |
| Q9LEW0 | Ubiquitin C-terminal hydrolase 22 OS=Arabidopsis thaliana OX=3702 GN=UBP22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843XEG6 | Ubiquitin carboxyl-terminal hydrolase OS=Colocasia esculenta OX=4460 GN=Taro_050638 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg33031, jg7808 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10597 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031799 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g044210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25566, Sbi_jg9386 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19226 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011038, GOSA_00011039, GOSA_00014565 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl41930, Sgl42021, Sgl46724 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015113, gene:ENSEOMG00000018580 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001140, CQ.Regalona.r1.2BG0002210 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30251170, pistato.v30261670 |
| Apiaceae | Apium graveolens | 2 | Ag3G02744, Ag9G02664 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G010400, COCNU_01G018110, COCNU_11G000590 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103707255, gene-LOC103710115, gene-LOC103711475 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.3130.V1.1, AsparagusV1_05.3426.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G22440, Ftri15G24350 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013142m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g026430.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2476, Ceq06G1407 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2702, Cgl06G1469 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g03540, gene.Cymno06g07400 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0452s00007.v1.0, Dusal.0452s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g08360, gene.Thate04g10350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1546 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001113 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00032, Lb4G25134, Lb6G32028 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2496, BH09.2718, CH09.2914 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0301730, gene-QOZ80_4BG0332480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0205200.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046756 |
| Poaceae | Oryza coarctata | 2 | Oco07G017450, Oco08G016840 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g55360.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G250100, gene-BS78_06G257500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300725, Pt_Chr0300779 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G002490, Chr26G016850 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G876100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG072460, gene_TRIDC2BG078660 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G516100.1, TraesCS2B02G544700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb068590_P002, Zm00001eb080880_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23010, nbis-gene-23011 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20552 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2571, evm.TU.LG17.1613 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g04370, gene.Posoc03g13430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.83, evm.TU.Scaffold_10_RagTag.918 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12904, nbisL1-mrna-13560 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10803, nbisL1-mrna-19082 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9167 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.219, evm.TU.utg000033l.56 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004109, Maker00015172 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16719, nbisL1-mrna-3721 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7794 |
| Salicaceae | Populus euphratica | 3 | populus_peu04667, populus_peu05701, populus_peu13019 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603113, gene-LOC132635621 |
| Solanaceae | Solanum chilense | 2 | SOLCI000349300, SOLCI003605400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026229, gene-LOC107027053 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12239_chr02_+, gene_7245 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1011 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32530.v3.1 |