Basic Information
Locus ID:
gene.Cymno03g00120
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the heat shock protein 70 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 127178 | 134633 | + | gene.Cymno03g00120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 103,159.68 Da | 38.65 | 88.56 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10230 | HYOU1-like_NBD | 65 | 453 | 1.02559E-178 | - |
| Pfam | PF00012 | Hsp70 protein | 65 | 774 | 4.1E-95 | IPR013126 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 64 | 247 | 3.0E-38 | IPR043129 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 253 | 454 | 4.92E-41 | IPR043129 |
| SUPERFAMILY | SSF100934 | Heat shock protein 70kD (HSP70), C-terminal subdomain | 701 | 783 | 8.04E-17 | IPR029048 |
| Gene3D | G3DSA:3.30.420.40 | - | 248 | 435 | 1.6E-109 | - |
| Gene3D | G3DSA:3.30.30.30 | - | 130 | 182 | 1.6E-109 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 67 | 453 | 1.6E-109 | - |
| Gene3D | G3DSA:2.60.34.10 | Substrate Binding Domain Of DNAk; Chain A, domain 1 | 463 | 618 | 5.2E-11 | IPR029047 |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 302 | 387 | 1.6E-109 | - |
| Gene3D | G3DSA:1.20.1270.10 | - | 674 | 786 | 1.2E-24 | IPR029048 |
| ProSitePatterns | PS01036 | Heat shock hsp70 proteins family signature 3. | 409 | 423 | - | IPR018181 |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 202 | 222 | 9.1E-15 | - |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 406 | 422 | 9.1E-15 | - |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 95 | 107 | 9.1E-15 | - |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 438 | 458 | 9.1E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 927 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 870 | 927 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 892 | - | - |
| Coils | Coil | Coil | 818 | 838 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16660.1 | heat shock protein 70 (Hsp 70) family protein. | 0 |
| RefSeq | XP_010936815.1 | heat shock 70 kDa protein 17 [Elaeis guineensis] | 0 |
| F4JMJ1 | Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana OX=3702 GN=HSP70-17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SBT1 | heat shock 70 kDa protein 17 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105056346 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24110 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13423 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000054 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g122530 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31242, Sbi_jg58024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25658 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004528, GOSA_00004529 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54595, Sgl59929 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004347, gene:ENSEOMG00000020016 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027480, CQ.Regalona.r1.5BG0029100 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30279880 |
| Apiaceae | Apium graveolens | 3 | Ag3G00572, Ag4G00703, Ag4G02128 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G009480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701937 |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.2476.V1.1, AsparagusV1_03.2657.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G05419, Ftri3G08320 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G16660.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024376m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g15270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g073050.2N, BniB05g019630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2961 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3075 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00120 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0079s00021.v1.0, Dusal.0079s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g01850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3697 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1856 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001316 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13402, Lb5G28139 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3186, BH07.3018, CH07.3094 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0143020, gene-QOZ80_2BG0198410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0608780.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024227, gene-QYE76_024743 |
| Poaceae | Oryza coarctata | 1 | Oco03G019600 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g48110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G251200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203652, Pt_Chr0206883 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G003890, Chr09G021950 |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G347600, Tel3E01G465100, Tel3E01G911900 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG020050, gene_TRIDC6AG042320 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1B02G206700.1, TraesCS6A02G276700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb188700_P002, Zm00001eb188750_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22061, nbis-gene-8945 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14259, Zma_g17004 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1301, evm.TU.LG09.673 |
| Posidoniaceae | Posidonia oceanica | 6 | gene.Posoc01g01670, gene.Posoc01g35940, gene.Posoc02g02840 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1534, evm.TU.Scaffold_8_RagTag.266 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19942 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13660, nbisL1-mrna-19352 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13469 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.159, evm.TU.utg000018l.818 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011958 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13149 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12227 |
| Salicaceae | Populus euphratica | 2 | populus_peu10701, populus_peu26414 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617909 |
| Solanaceae | Solanum chilense | 1 | SOLCI002825700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026092 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17579_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2802 |
| Zosteraceae | Zostera marina | 1 | Zosma06g21400.v3.1 |