Basic Information
Locus ID:
gene.Cymno03g00060
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
CPK13
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 80828 | 91823 | + | gene.Cymno03g00060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 59,170.83 Da | 39.58 | 86.20 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 429 | 491 | 3.89842E-19 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 51 | 309 | 1.19392E-131 | - |
| Pfam | PF13499 | EF-hand domain pair | 428 | 491 | 2.2E-15 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 54 | 310 | 3.2E-73 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 356 | 418 | 4.4E-10 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 51 | 317 | 5.13E-83 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 339 | 517 | 8.65E-46 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 53 | 137 | 2.2E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 319 | 494 | 2.3E-54 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 138 | 318 | 3.9E-60 | - |
| SMART | SM00054 | efh_1 | 429 | 457 | 3.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 357 | 385 | 1.1E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 465 | 493 | 9.1E-6 | IPR002048 |
| SMART | SM00220 | serkin_6 | 52 | 310 | 5.2E-95 | IPR000719 |
| SMART | SM00054 | efh_1 | 393 | 421 | 0.23 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 389 | 424 | 9.910664 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 461 | 496 | 13.620752 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 353 | 388 | 14.792358 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 425 | 460 | 15.266581 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 52 | 310 | 46.830902 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 474 | 486 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 366 | 378 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 58 | 81 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 438 | 450 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 172 | 184 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_020276451.1 | calcium-dependent protein kinase 13-like [Asparagus officinalis] | 0 |
| Q8LPZ7 | Calcium-dependent protein kinase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P6I1 | Putative Calcium-dependent protein kinase OS=Zostera marina OX=29655 GN=ZOSMA_397G00010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology