Basic Information
Locus ID:
gene.Cymno02g18870
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 27865043 | 27870881 | - | gene.Cymno02g18870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 63,617.21 Da | 52.15 | 74.53 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 204 | 258 | 9.34714E-13 | - |
| Pfam | PF00412 | LIM domain | 204 | 259 | 4.9E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 355 | 563 | 7.3E-87 | IPR022087 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 202 | 262 | 1.0E-12 | - |
| SMART | SM00132 | lim_4 | 203 | 257 | 2.6E-8 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 202 | 264 | 11.098 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 204 | 239 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 149 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_039131936.1 | protein DA1-related 2-like isoform X4 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1Z8H0 | Protein DA1-related 2 (Fragment) OS=Anthurium amnicola OX=1678845 GN=DAR2_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology