Basic Information
Locus ID:
gene.Cymno02g18860
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 27853766 | 27858018 | - | gene.Cymno02g18860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 60,769.81 Da | 56.17 | 67.81 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00412 | LIM domain | 158 | 212 | 1.7E-5 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 309 | 515 | 3.5E-74 | IPR022087 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 156 | 217 | 3.5E-9 | - |
| SMART | SM00132 | lim_4 | 157 | 211 | 0.0011 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 156 | 222 | 10.3555 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 95 | 114 | 8.934976 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 158 | 193 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 464 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_043698816.1 | protein DA1-related 2-like isoform X1 [Telopea speciosissima] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1Z8H0 | Protein DA1-related 2 (Fragment) OS=Anthurium amnicola OX=1678845 GN=DAR2_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology