Basic Information
Locus ID:
gene.Cymno02g17810
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 27077945 | 27078418 | - | gene.Cymno02g17810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 18,597.92 Da | 74.01 | 70.13 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 75 | 118 | 1.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 68 | 124 | 6.85E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 136 | 4.3E-19 | IPR013083 |
| SMART | SM00744 | ringv_2 | 75 | 118 | 0.0042 | IPR011016 |
| SMART | SM00184 | ring_2 | 76 | 117 | 3.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 76 | 118 | 12.179465 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | XP_034700707.1 | RING-H2 finger protein ATL5-like [Vitis riparia] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | D7T9E7 | RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g02380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology