Basic Information
Locus ID:
gene.Cymno02g16740
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 26154276 | 26161329 | + | gene.Cymno02g16740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 95,968.03 Da | 48.04 | 77.20 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 547 | 858 | 1.06173E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 724 | 756 | 0.0098 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 638 | 672 | 6.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 551 | 858 | 1.06E-53 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 78 | 320 | 8.7E-18 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 78 | 318 | 3.1E-23 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 525 | 862 | 6.9E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 632 | 672 | 3.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 590 | 629 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 718 | 756 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 675 | 714 | 9.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 765 | 804 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 821 | 860 | 51.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 540 | 579 | 0.41 | IPR001680 |
| SMART | SM00220 | serkin_6 | 1 | 309 | 0.0053 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 725 | 765 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 639 | 674 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 639 | 674 | 10.258324 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 725 | 758 | 10.390142 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 309 | 10.223842 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 743 | 757 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 659 | 673 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 743 | 757 | 8.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 616 | 630 | 8.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 659 | 673 | 8.8E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 170 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_010260211.1 | PREDICTED: protein SPA1-RELATED 3-like isoform X2 [Nelumbo nucifera] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YT62 | Protein SPA1-RELATED 3 OS=Anthurium amnicola OX=1678845 GN=SPA3_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology