Basic Information
Locus ID:
gene.Cymno02g15900
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 25261965 | 25274106 | + | gene.Cymno02g15900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 142,257.14 Da | 50.40 | 70.16 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 172 | 268 | 2.04539E-46 | - |
| CDD | cd13999 | STKc_MAP3K-like | 1018 | 1275 | 1.04178E-113 | - |
| Pfam | PF00564 | PB1 domain | 185 | 269 | 2.9E-20 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1013 | 1275 | 1.8E-63 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1002 | 1274 | 1.01E-78 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 184 | 273 | 2.79E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 187 | 270 | 3.1E-12 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1005 | 1099 | 4.4E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1100 | 1288 | 5.7E-56 | - |
| SMART | SM00220 | serkin_6 | 1012 | 1281 | 2.0E-59 | IPR000719 |
| SMART | SM00666 | PB1_new | 183 | 270 | 1.7E-29 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1012 | 1285 | 41.558918 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1137 | 1149 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1018 | 1043 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1131 | 1149 | 5.8E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1202 | 1224 | 5.8E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1246 | 1268 | 5.8E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1094 | 1107 | 5.8E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 39 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_010923831.1 | uncharacterized protein LOC105046804 [Elaeis guineensis] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PMP2 | Protein kinase domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_1G01920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology