Basic Information
Locus ID:
gene.Cymno02g15570
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 24757244 | 24761057 | - | gene.Cymno02g15570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 25,827.65 Da | 53.42 | 101.36 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 17 | 53 | 6.8E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 57 | 4.19E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 141 | 203 | 7.69E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 54 | 1.7E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 220 | 4.9E-6 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020591453.1 | F-box/LRR-repeat protein At3g48880-like isoform X1 [Phalaenopsis equestris] | 0 |
| TrEMBL | A0A7I8IKD3 | F-box domain-containing protein OS=Spirodela intermedia OX=51605 GN=SI7747_04004795 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold008771G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712626 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15570 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1532, BH01.1733, CH01.1808 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0188620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067205 |
| Poaceae | Oryza coarctata | 1 | Oco05G016910 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g36439.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G171500 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G028080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G698300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG059020, gene_TRIDC2BG062130 |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G408800.1, TraesCS2B02G427100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb219960_P001, Zm00001eb344250_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20525 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3158 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g18310 |