Basic Information
Locus ID:
gene.Cymno02g15390
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
STICHEL-like 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 24564899 | 24574242 | + | gene.Cymno02g15390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 133,781.23 Da | 47.44 | 78.77 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18137 | HLD_clamp_pol_III_gamma_tau | 610 | 673 | 7.40735E-19 | IPR045085 |
| CDD | cd00009 | AAA | 451 | 610 | 2.31018E-5 | - |
| Pfam | PF12169 | DNA polymerase III subunits gamma and tau domain III | 664 | 730 | 1.1E-6 | IPR022754 |
| Pfam | PF13177 | DNA polymerase III, delta subunit | 453 | 610 | 1.5E-24 | - |
| SUPERFAMILY | SSF48019 | post-AAA+ oligomerization domain-like | 680 | 784 | 1.53E-6 | IPR008921 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 437 | 659 | 2.64E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 428 | 607 | 8.4E-42 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 611 | 673 | 9.3E-16 | - |
| TIGRFAM | TIGR02397 | dnaX_nterm: DNA polymerase III, subunit gamma and tau | 436 | 784 | 1.6E-101 | IPR012763 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 373 | - | - |
| Coils | Coil | Coil | 746 | 773 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18820.1 | AAA-type ATPase family protein. | 0 |
| RefSeq | XP_010242130.1 | PREDICTED: protein STICHEL-like 3 isoform X1 [Nelumbo nucifera] | 0 |
| F4JRP0 | Protein STICHEL-like 3 OS=Arabidopsis thaliana OX=3702 GN=At4g18820 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3S3NXC6 | Protein STICHEL-like protein 3 isoform X1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02568200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg22181, jg24972, jg38722, jg38723 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_484 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016914 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40342, Sbi_jg50336 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1927 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011506 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45574, Sgl50356 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010680, gene:ENSEOMG00000032545 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0007530, CQ.Regalona.r1.8BG0007680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30071850 |
| Apiaceae | Apium graveolens | 2 | Ag11G04873, Ag8G00833 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G003690, COCNU_14G002400 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697730, gene-LOC103708968 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3469.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G00089, Ftri5G23822 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G18820.1, AT5G45720.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000763m.g.v1.0, Thhalv10024266m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g10610.v2.2, Sp7g17530.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g062680.2N, BniB04g016090.2N, BniB05g017530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0515 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0617 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15390 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g19880 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3823 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.773 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005539 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3067, AH05.1645, BH02.3153, BH05.1797, CH02.3371 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0032060, gene-QOZ80_1BG0082270 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0082180.1, HORVU.MOREX.r3.3HG0286720.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016028, gene-QYE76_017515, gene-QYE76_055433 |
| Poaceae | Oryza coarctata | 4 | Oco01G019910, Oco02G019860, Oco09G014940, Oco10G014870 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g53070.1, LOC_Os05g45340.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G265300, gene-BS78_09G211200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503989, Pt_Chr0504077 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G014400, Chr02G010490, Chr03G015480, Chr05G022910 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G546500, Tel3E01G463500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG051480, gene_TRIDC1BG058720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G348900.1, TraesCS1B02G364000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb154140_P002, Zm00001eb293320_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25075, nbis-gene-26380 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11068, Zma_g28651 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.951, evm.TU.LG20.925 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.649, evm.TU.Scaffold_13_RagTag.271 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24075 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11973, nbisL1-mrna-15076, nbisL1-mrna-1603 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-19806, nbisL1-mrna-19807, nbisL1-mrna-20946 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.164, evm.TU.utg000027l.183 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015809, Maker00017839 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-5799, nbisL1-mrna-5931 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16857, nbisL1-mrna-19130 |
| Salicaceae | Populus euphratica | 5 | populus_peu09900, populus_peu09901, populus_peu17990 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622026 |
| Solanaceae | Solanum chilense | 1 | SOLCI005160500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011229 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5402 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0987, TC08G0387 |
| Zosteraceae | Zostera marina | 2 | Zosma01g07080.v3.1, Zosma04g27230.v3.1 |