Basic Information
Locus ID:
gene.Cymno02g15000
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Endonuclease/Exonuclease/phosphatase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 24245872 | 24248788 | - | gene.Cymno02g15000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 50,004.83 Da | 55.00 | 72.56 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09080 | TDP2 | 181 | 446 | 1.60531E-83 | - |
| Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 184 | 420 | 5.4E-9 | IPR005135 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 77 | 100 | 8.0E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 74 | 99 | 1.28E-5 | IPR036443 |
| SUPERFAMILY | SSF56219 | DNase I-like | 181 | 447 | 2.49E-28 | IPR036691 |
| Gene3D | G3DSA:2.30.30.380 | - | 70 | 108 | 3.0E-5 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 173 | 449 | 3.8E-78 | IPR036691 |
| SMART | SM00547 | zf_4 | 36 | 61 | 9.9E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 76 | 100 | 5.2E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 73 | 103 | 8.219233 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 78 | 97 | - | IPR001876 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11800.1 | endonuclease/exonuclease/phosphatase family protein. | 0 |
| RefSeq | XP_010278645.1 | PREDICTED: uncharacterized protein LOC104612770 [Nelumbo nucifera] | 0 |
| TrEMBL | A0A1U8BBC3 | uncharacterized protein LOC104612770 OS=Nelumbo nucifera OX=4432 GN=LOC104612770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20433 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_86 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017508 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g185970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40165, Sbi_jg50120 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1744 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011341, GOSA_00011342 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl46334, Sgl51050 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011037, gene:ENSEOMG00000035131 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0006990, CQ.Regalona.r1.8AG0001570 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30196780, pistato.v30196810, pistato.v30196820 ... |
| Apiaceae | Apium graveolens | 2 | Ag5G01302, Ag8G01080 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G011960, COCNU_14G009720, contig69461970G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707196, gene-LOC103707197 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1168.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G22915 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G11800.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g10430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g006540.2N, BniB02g006560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1618 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1796 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15000 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0488s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1793 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1143 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005939 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22922 |
| Poaceae | Echinochloa crus-galli | 21 | AH01.1539, AH01.2122, AH03.3128, AH03.3129, BH01.1740 ... |
| Poaceae | Eleusine coracana subsp. coracana | 11 | gene-QOZ80_2AG0122960, gene-QOZ80_2BG0179150 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0318330.1, HORVU.MOREX.r3.6HG0567060.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020756, gene-QYE76_052711 |
| Poaceae | Oryza coarctata | 5 | Oco14G008820, Oco19G003780, Oco20G003620, Oco23G005660 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os07g32610.2, LOC_Os10g26164.1, LOC_Os12g22620.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G172300, gene-BS78_01G245700 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0104213, Pt_Chr0105761, Pt_Chr0202450, Pt_Chr0202470 ... |
| Poaceae | Sporobolus alterniflorus | 14 | Chr01G010540, Chr09G008600, Chr09G008610, Chr09G008620 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G768500, Tel6E01G294900, Tel7E01G811800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG025190 |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G372500.1, TraesCS1A02G372600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb043220_P002, Zm00001eb048580_P002 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-27866, nbis-gene-38338, nbis-gene-38340 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13188 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1895, evm.TU.LG14.1082 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.50 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29773 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5440 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20777 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.35 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015359 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6058 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23430 |
| Salicaceae | Populus euphratica | 1 | populus_peu10361 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606312 |
| Solanaceae | Solanum chilense | 1 | SOLCI002134900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009074 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18470_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1633 |
| Zosteraceae | Zostera marina | 1 | Zosma01g08160.v3.1 |