Basic Information
Locus ID:
gene.Cymno02g14540
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 23900843 | 23908296 | - | gene.Cymno02g14540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.83 | 98,709.55 Da | 61.63 | 59.39 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 396 | 525 | 1.09597E-62 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 408 | 516 | 2.3E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 201 | 371 | 1.0E-50 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 54 | 92 | 9.76E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 249 | 532 | 1.09E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 388 | 557 | 3.0E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 153 | 387 | 1.3E-87 | IPR027417 |
| SMART | SM00487 | ultradead3 | 196 | 399 | 1.8E-64 | IPR014001 |
| SMART | SM00490 | helicmild6 | 436 | 516 | 3.8E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 58 | 91 | 9.6E-6 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 208 | 382 | 31.081455 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 57 | 91 | 10.915601 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 411 | 555 | 25.098572 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 177 | 205 | 10.329114 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 328 | 336 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 63 | 89 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 803 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 735 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 718 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 871 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_010248506.1 | PREDICTED: ATP-dependent RNA helicase-like protein DB10 isoform X1 [Nelumbo nucifera] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U7ZJK4 | ATP-dependent RNA helicase-like protein DB10 isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104591406 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology