Basic Information
Locus ID:
gene.Cymno02g13500
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 22966722 | 22971030 | - | gene.Cymno02g13500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 100,364.02 Da | 33.62 | 105.08 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 43 | 82 | 1.2E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 472 | 532 | 2.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 545 | 603 | 4.6E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 161 | 180 | 1.3 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 766 | 841 | 1.2E-11 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 285 | 611 | 2.35E-59 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 55 | 368 | 2.04E-53 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 708 | 893 | 2.82E-27 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 753 | 903 | 1.3E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 196 | 4.1E-41 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 684 | 745 | 3.0E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 197 | 283 | 2.3E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 284 | 350 | 4.5E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 351 | 637 | 1.7E-75 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 158 | 182 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 255 | 279 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 327 | 351 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 109 | 134 | 4.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 447 | 471 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 495 | 519 | 160.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 573 | 901 | 10.563058 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 111 | 133 | 7.380825 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 714 | 737 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 112 | 125 | 2.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 255 | 268 | 2.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_010260335.1 | PREDICTED: receptor-like protein kinase HSL1 [Nelumbo nucifera] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I371 | Receptor-like protein kinase HSL1 OS=Cocos nucifera OX=13894 GN=COCNU_03G010990 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology