Basic Information
Locus ID:
gene.Cymno02g12900
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 22381861 | 22386907 | - | gene.Cymno02g12900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 93,007.45 Da | 48.10 | 90.75 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 560 | 693 | 1.21729E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 716 | 758 | 2.3E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 562 | 692 | 2.6E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 522 | 761 | 3.37E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 521 | 786 | 3.8E-96 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 694 | 782 | 3.8E-96 | - |
| SMART | SM00382 | AAA_5 | 558 | 695 | 1.8E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 665 | 684 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 781 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_010924775.1 | peroxisome biosynthesis protein PAS1 isoform X1 [Elaeis guineensis] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IUJ9 | Peroxisome biosynthesis protein PAS1 OS=Cocos nucifera OX=13894 GN=COCNU_14G001980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology