Basic Information
Locus ID:
gene.Cymno02g11800
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
phagosome-lysosome fusion involved in apoptotic cell clearance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 19704368 | 19809707 | + | gene.Cymno02g11800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 414,784.13 Da | 47.72 | 91.61 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 3250 | 3570 | 9.6E-60 | IPR000490 |
| Pfam | PF14649 | Spatacsin C-terminus | 2790 | 3075 | 2.1E-63 | IPR028107 |
| Pfam | PF07983 | X8 domain | 3589 | 3658 | 4.0E-15 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 3250 | 3570 | 8.71E-73 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 3585 | 3675 | 2.7E-6 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 3249 | 3574 | 3.4E-101 | - |
| SMART | SM00768 | X8_cls | 3588 | 3672 | 2.8E-29 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 3487 | 3500 | - | IPR000490 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3187 | 3211 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39420.2 | 0 | |
| RefSeq | XP_029121263.1 | uncharacterized protein LOC105047910 [Elaeis guineensis] | 0 |
| Q6NKW9 | Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana OX=3702 GN=At1g64760 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9RFD2 | uncharacterized protein LOC105047910 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105047910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39453 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13282 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027145 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133220 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13381, Sbi_jg52465 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9375 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013392 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl34136, Sgl34369, Sgl34370, Sgl39771 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000346, gene:ENSEOMG00000001052 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30043900 |
| Apiaceae | Apium graveolens | 1 | Ag4G01302 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G000400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704848 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2232.V1.1, AsparagusV1_01.2233.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G05071 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G39420.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024179m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g36440.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g000500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1841 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1905 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g11800 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g24170 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6748 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.775 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014415 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G27745, Lb5G27747, Lb5G27748 |
| Poaceae | Echinochloa crus-galli | 3 | BH05.1168, CH01.2653, CH05.1543 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0238190.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050304 |
| Poaceae | Oryza coarctata | 2 | Oco01G003510, Oco02G003550 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08750.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G254700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200132, Pt_Chr0200136 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G005870, Chr08G006300 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G199400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG014370, gene_TRIDC3BG018860 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G116000.1, TraesCS3B02G135100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb062420_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13242 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7749 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.342, evm.TU.LG15.606 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g15160 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.964, evm.TU.Scaffold_3_RagTag.965 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1081 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16396 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2265 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.647 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002043 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5106 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1682 |
| Salicaceae | Populus euphratica | 4 | populus_peu13874, populus_peu13875, populus_peu37073 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614818 |
| Solanaceae | Solanum chilense | 1 | SOLCI001314600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017581 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2749 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0331 |
| Zosteraceae | Zostera marina | 1 | Zosma01g22690.v3.1 |