Basic Information
Locus ID:
gene.Cymno02g11470
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 15321491 | 15343014 | + | gene.Cymno02g11470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 136,349.61 Da | 40.46 | 85.63 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 455 | 766 | 3.13371E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 557 | 591 | 3.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1023 | 1055 | 0.043 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 943 | 1202 | 1.15E-32 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 451 | 767 | 7.79E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 642 | 785 | 9.6E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 379 | 641 | 7.6E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 939 | 1212 | 6.8E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1108 | 1149 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 483 | 0.57 | IPR001680 |
| SMART | SM00320 | WD40_4 | 684 | 724 | 7.4 | IPR001680 |
| SMART | SM00668 | ctlh | 134 | 192 | 8.8E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1017 | 1056 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 934 | 971 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 550 | 591 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 594 | 635 | 8.0E-4 | IPR001680 |
| SMART | SM00667 | Lish | 104 | 136 | 1.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 638 | 681 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 974 | 1014 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 504 | 544 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 727 | 768 | 150.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 104 | 136 | 10.043597 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1024 | 1055 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 492 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 557 | 600 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 134 | 192 | 13.022783 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1024 | 1055 | 11.143396 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1202 | 1237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1214 | 1237 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_006855163.1 | topless-related protein 1 [Amborella trichopoda] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | U5D326 | TOPLESS OS=Amborella trichopoda OX=13333 GN=AMTR_s00051p00079490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology