Basic Information
Locus ID:
gene.Cymno02g09520
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 7438885 | 7453855 | - | gene.Cymno02g09520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 79,365.69 Da | 72.14 | 65.28 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 630 | 676 | 5.3E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 631 | 677 | 2.38E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 612 | 682 | 6.9E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 632 | 671 | 10.173057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 164 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010241654.1 | PREDICTED: uncharacterized protein LOC104586194 [Nelumbo nucifera] | 0 |
| TrEMBL | A0A6N2LQQ4 | RING-type domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS263386 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology