Basic Information
Locus ID:
gene.Cymno02g09270
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 7134017 | 7155411 | + | gene.Cymno02g09270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 92,851.71 Da | 54.63 | 67.39 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 494 | 3.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 346 | 379 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 499 | 536 | 2.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 341 | 674 | 5.49E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 332 | 704 | 2.4E-56 | IPR015943 |
| SMART | SM00320 | WD40_4 | 593 | 629 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 630 | 671 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 577 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 494 | 3.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 536 | 7.9E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 463 | 497 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 463 | 503 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 503 | 538 | 10.311051 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 347 | 381 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 503 | 545 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 347 | 381 | 13.048234 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 481 | 495 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 523 | 537 | 4.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 366 | 380 | 4.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 481 | 495 | 4.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 772 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 187 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_008802494.1 | WD repeat-containing protein 44-like [Phoenix dactylifera] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XPG7 | WD repeat-containing protein 44 OS=Anthurium amnicola OX=1678845 GN=WDR44_6 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology