Basic Information
Locus ID:
gene.Cymno02g09150
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 6994385 | 7012118 | + | gene.Cymno02g09150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 118,555.88 Da | 46.22 | 80.88 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 728 | 767 | 3.61357E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 661 | 710 | 1.9E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 470 | 525 | 3.1E-16 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 728 | 768 | 3.6E-7 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 965 | 1056 | 8.34E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 717 | 769 | 1.34E-16 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 790 | 867 | 5.14E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 812 | 872 | 2.4E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 713 | 791 | 5.1E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 817 | 870 | 0.002 | IPR001965 |
| SMART | SM00249 | PHD_3 | 727 | 768 | 2.9E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 725 | 770 | 10.5313 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 728 | 767 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 422 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_008779219.1 | uncharacterized protein LOC103698933 isoform X1 [Phoenix dactylifera] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P2H3 | PHD-type domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_41G00900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology