Basic Information
Locus ID:
gene.Cymno02g05710
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 4268340 | 4271251 | - | gene.Cymno02g05710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 35,385.41 Da | 30.57 | 86.17 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 176 | 312 | 1.8E-20 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 15 | 155 | 5.49E-15 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 170 | 311 | 1.15E-29 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 159 | 315 | 3.9E-24 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 9 | 156 | 3.4E-13 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 1 | 156 | 10.107152 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 171 | 316 | 26.331114 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_010928867.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Elaeis guineensis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9RMM7 | glycerophosphodiester phosphodiesterase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105050513 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology