Basic Information
Locus ID:
gene.Cymno02g05680
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 4188275 | 4234622 | - | gene.Cymno02g05680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 82,414.45 Da | 37.91 | 90.95 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 362 | 654 | 1.2E-36 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 42 | 340 | 5.23E-30 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 356 | 654 | 6.28E-47 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 355 | 658 | 6.0E-49 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 41 | 342 | 1.1E-22 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 43 | 342 | 19.242266 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 357 | 660 | 30.131319 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_010928867.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Elaeis guineensis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MUT6 | glycerophosphodiester phosphodiesterase OS=Cocos nucifera OX=13894 GN=COCNU_01G007040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology