Basic Information
Locus ID:
gene.Cymno02g05230
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 3880306 | 3888620 | - | gene.Cymno02g05230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 94,427.43 Da | 50.60 | 66.97 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 580 | 624 | 7.14205E-4 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 577 | 617 | 6.02E-6 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 49 | 250 | 8.16E-8 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 576 | 626 | 9.8E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 804 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 860 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 690 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_029122100.1 | uncharacterized protein LOC105050720 [Elaeis guineensis] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8N4IF86 | uncharacterized protein LOC105050720 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105050720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology