Basic Information
Locus ID:
gene.Cymno02g05030
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 3720021 | 3729185 | - | gene.Cymno02g05030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 50,578.75 Da | 40.30 | 92.80 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 269 | 1.6E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 207 | 4.7E-15 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 52 | 81 | 3.8E-5 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 377 | 2.21E-9 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 276 | 1.44E-51 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 154 | 2.6E-29 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 382 | 6.8E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 155 | 284 | 2.8E-26 | IPR036770 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 2.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0038 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 369 | 1.7E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 1.3E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 286 | 3100.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 3.2E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 17.0 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 11.63855 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 370 | 10.143551 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.346704 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 11.80799 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.965 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 205 | 11.479361 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.84968 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.879286 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 12.31548 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 1.4E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 1.4E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_008779779.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X2 [Phoenix dactylifera] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4S8K935 | RING-type domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t02020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology