Basic Information
Locus ID:
gene.Cymno02g03750
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 2779704 | 2787034 | - | gene.Cymno02g03750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 46,155.13 Da | 52.75 | 71.47 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 60 | 130 | 3.94263E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 144 | 218 | 8.85107E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 264 | 338 | 2.87395E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 145 | 215 | 2.1E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 60 | 125 | 2.2E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 266 | 331 | 7.5E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 257 | 345 | 7.25E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 43 | 136 | 7.52E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 137 | 228 | 5.24E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 139 | 236 | 4.3E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 138 | 1.9E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 240 | 343 | 8.1E-25 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 265 | 334 | 9.2 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 265 | 334 | 4.5E-19 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 144 | 217 | 2.1E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 59 | 128 | 3.1E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 144 | 217 | 0.016 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 143 | 221 | 17.421124 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 58 | 132 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 264 | 338 | 16.380745 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 260 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_042486815.1 | oligouridylate-binding protein 1-like [Macadamia integrifolia] | 0 |
| Q9LJH8 | Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PBY9 | RNA-binding protein OS=Zostera marina OX=29655 GN=ZOSMA_310G00090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology