Basic Information
Locus ID:
gene.Cymno02g00960
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 792157 | 799547 | - | gene.Cymno02g00960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 43,746.25 Da | 32.90 | 79.29 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 28 | 274 | 2.56E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 186 | 1.1E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 187 | 315 | 2.7E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 10 | 55 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 229 | 0.076 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 273 | 4.0 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_019706260.1 | autophagy-related protein 18c isoform X1 [Elaeis guineensis] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0PI79 | autophagy-related protein 18c isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105044863 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology