Basic Information
Locus ID:
gene.Cymno02g00680
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 572583 | 573566 | + | gene.Cymno02g00680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 36,095.41 Da | 53.85 | 56.94 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 183 | 224 | 2.87841E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 38 | 1.6E-10 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 182 | 224 | 9.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 230 | 3.09E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 230 | 7.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 183 | 223 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 183 | 224 | 12.135206 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 278 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_010931555.1 | probable E3 ubiquitin-protein ligase RHC1A [Elaeis guineensis] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RT98 | RING-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105052448 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology