Basic Information
Locus ID:
gene.Cymno01g15770
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 28851084 | 28877240 | - | gene.Cymno01g15770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 79,156.65 Da | 50.64 | 90.28 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 262 | 371 | 1.6E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 518 | 562 | 3.9E-7 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 500 | 563 | 6.95E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 138 | 403 | 1.15E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 660 | 703 | 2.65E-5 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 142 | 404 | 3.1E-27 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 494 | 572 | 6.4E-9 | - |
| SMART | SM00358 | DRBM_3 | 499 | 563 | 3.8E-7 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 631 | 701 | 0.02 | IPR014720 |
| SMART | SM00577 | forpap2 | 204 | 381 | 8.5E-11 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 145 | 395 | 17.605581 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 498 | 564 | 13.106365 | IPR014720 |
| Coils | Coil | Coil | 166 | 186 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_010923073.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Elaeis guineensis] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8K0I4J3 | protein-serine/threonine phosphatase OS=Cocos nucifera OX=13894 GN=COCNU_04G000320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology