Basic Information
Locus ID:
gene.Cymno01g13580
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
PLD1
Description:
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 27374871 | 27385530 | + | gene.Cymno01g13580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 128,477.07 Da | 45.21 | 81.57 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04015 | C2_plant_PLD | 2 | 152 | 1.40274E-61 | - |
| Pfam | PF12357 | Phospholipase D C terminal | 731 | 798 | 1.6E-26 | IPR024632 |
| Pfam | PF13259 | Protein of unknown function (DUF4050) | 1059 | 1097 | 2.3E-12 | IPR025124 |
| Pfam | PF13259 | Protein of unknown function (DUF4050) | 988 | 1058 | 1.5E-11 | IPR025124 |
| Pfam | PF00614 | Phospholipase D Active site motif | 659 | 685 | 2.2E-7 | IPR001736 |
| Pfam | PF00168 | C2 domain | 37 | 131 | 1.9E-11 | IPR000008 |
| Pfam | PF00614 | Phospholipase D Active site motif | 331 | 369 | 7.7E-11 | IPR001736 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 159 | 445 | 9.94E-35 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 154 | 5.77E-17 | IPR035892 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 487 | 743 | 1.52E-28 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 206 | 445 | 1.2E-23 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 483 | 709 | 4.8E-21 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 7 | 162 | 1.1E-11 | IPR035892 |
| SMART | SM00155 | pld_4 | 658 | 685 | 1.5E-8 | IPR001736 |
| SMART | SM00239 | C2_3c | 9 | 129 | 2.6E-8 | IPR000008 |
| SMART | SM00155 | pld_4 | 331 | 369 | 1.3E-4 | IPR001736 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 658 | 685 | 15.355199 | IPR001736 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1 | 130 | 12.893085 | IPR000008 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 331 | 369 | 11.436799 | IPR001736 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 836 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 847 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko00565 (Ether lipid metabolism)
map00565 (Ether lipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04072 (Phospholipase D signaling pathway)
map04072 (Phospholipase D signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15730.1 | phospholipase D alpha 1. Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis. | 0 |
| RefSeq | XP_020251412.1 | phospholipase D alpha 1 [Asparagus officinalis] | 0 |
| Q43270 | Phospholipase D alpha 1 OS=Zea mays OX=4577 GN=PLD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FT12 | Phospholipase D OS=Asparagus officinalis OX=4686 GN=A4U43_C01F25860 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology